Fig. 3
From: Regulation of transcriptional homeostasis by DNA methylation upon genome duplication in pak choi
Differential DNA methylation profiles of Bc2X and Bc4X. A Distribution of the average methylation levels of Bc2X (blue) and Bc4X (red) across gene bodies and TEs and 1 kb flanking regions in the CG (upper panel), CHG (middle panel) and CHH (lower panel) contexts. Lines of the same color represent two biological replicates. B DNA methylation distribution of Bc2X (upper panel) and Bc4X (lower panel) in the three sequence contexts (CG, CHG, CHH) in genes, TEs and 1 kb flanking regions. Lines of the same color represent CG, CHG and CHH. C IGV plot of the DNA methylation levels of two genes (BraA08g004830.3C A08:3,634,826–3,636,399, BraA02g027140.3C A02:16,52,3570–16,528,000) and one TE (A02:20,577,546–20,583,430). Lines of the same color represent CG, CHG and CHH. D Histogram of methylation levels in different genome elements (exons and introns, intergenic regions and CDSs, TSSs and TTSs) for Bc2X (lower panel) and Bc4X (upper panel); three different colors represent CG, CHG and CHH, respectively. E Numbers of hyperDMCs and hypomethylated-DMCs (hypoDMCs) between Bc2X and Bc4X are shown for the CG, CHG, and CHH sequence contexts